Datasets

Zebrafish tumor/microenvironment transcriptomics
Raw spatial transcriptomics, scRNA-seq, and snRNA-seq data from Hunter, Moncada, et al., Nature Communications (2021) can be downloaded from GEO: GSE159709.
SpaceRanger output folders for the Visium samples can be downloaded from here.
The associated code can be found here and some useful functions can be found in my R package here.